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Authors and Citation

Authors

  • Xiaoyu Zhang. Contributor.
    ComBat-ref method and original implementation

  • Thomas Sirchi. Author, maintainer.

Citation

Source: inst/CITATION

Sirchi T (2026). ComBat-refQL: Reference-Batch Adjustment for RNA-Seq Counts. R package version 0.0.4, https://github.com/Thokas99/ComBat-refQL. 

@Manual{,
  title = {ComBat-refQL: Reference-Batch Adjustment for RNA-Seq Counts},
  author = {Thomas Sirchi},
  year = {2026},
  note = {R package version 0.0.4},
  url = {https://github.com/Thokas99/ComBat-refQL},
}

Zhang X (2025). “Highly effective batch effect correction method for RNA-seq count data.” Computational and Structural Biotechnology Journal. doi:10.1016/j.csbj.2024.12.010. 

@Article{,
  title = {Highly effective batch effect correction method for RNA-seq count data},
  author = {Xiaoyu Zhang},
  journal = {Computational and Structural Biotechnology Journal},
  year = {2025},
  doi = {10.1016/j.csbj.2024.12.010},
  pmid = {39802213},
}

Zhang Y, Parmigiani G, Johnson WE (2020). “ComBat-seq: batch effect adjustment for RNA-seq count data.” NAR Genomics and Bioinformatics, 2(3), lqaa078. doi:10.1093/nargab/lqaa078. 

@Article{,
  title = {ComBat-seq: batch effect adjustment for RNA-seq count data},
  author = {Yuqing Zhang and Giovanni Parmigiani and W Evan Johnson},
  journal = {NAR Genomics and Bioinformatics},
  year = {2020},
  volume = {2},
  number = {3},
  pages = {lqaa078},
  doi = {10.1093/nargab/lqaa078},
  pmid = {33015620},
}

Sanders L, Chok H, Samson F, Acuna A, Polo S, Boyko V, Chen Y, Dinh M, Gebre S, Galazka J, Costes S, Saravia-Butler A (2023). “Batch effect correction methods for NASA GeneLab transcriptomic datasets.” Frontiers in Astronomy and Space Sciences, 10, 1200132. doi:10.3389/fspas.2023.1200132. 

@Article{,
  title = {Batch effect correction methods for NASA GeneLab transcriptomic datasets},
  author = {Lauren M. Sanders and Henry Chok and Francoise Samson and Ana U. Acuna and Sung-Ho L. Polo and Viktoriya Boyko and Yi-Chun Chen and Minh Dinh and Samrawit Gebre and Jonathan M. Galazka and Sylvain V. Costes and Afshin M. Saravia-Butler},
  journal = {Frontiers in Astronomy and Space Sciences},
  year = {2023},
  volume = {10},
  pages = {1200132},
  doi = {10.3389/fspas.2023.1200132},
}