A lightweight validated S7 summary returned by summary(fit).
Usage
CombatRefQLSummary(
overview,
specification,
design,
batches,
gene_outcomes,
ql,
shrinkage,
dispersion,
input_actions,
warnings,
timings,
confidence
)Arguments
- overview
One-row size overview.
- specification
One-row method specification.
- design
One-row design diagnostics.
- batches
Reference scores by batch.
- gene_outcomes
Gene outcome counts and proportions.
- ql
QL and NB dispersion diagnostics.
- shrinkage
Batch-level QL-EB summaries.
- dispersion
Batch-level NB dispersion summaries.
- input_actions
Audited input transformations.
- warnings
Stored warning table.
- timings
Stage timing table.
- confidence
Correction-confidence counts.