Software

These projects support reproducible R, Python, and Nextflow workflows for biological data analysis.

veryMAD

Explicit MAD-based quality control and diagnostic visualisation for high-dimensional biological data.

R QC MAD

Python/AnnData implementation of explicit MAD-based quality control for modern single-cell workflows.

Python AnnData Scanpy

Reference-batch adjustment for bulk RNA-seq count data using quasi-likelihood modelling and explicit diagnostics.

R edgeR RNA-seq

Lightweight reproducible Nextflow workflow for RNA-seq quantification with Salmon and integrated QC.

Nextflow Salmon RNA-seq