Useful code collects R, Python, and Quarto workflows drawn from bioinformatics projects. Browse the methods catalog or open the GitHub repository.
[!CAUTION] Examples are provided as-is. Check each workflow’s inputs, assumptions, package versions, and design before reuse. Outputs need independent review; this repository does not establish clinical or diagnostic performance.
Guide labels
| Label | Meaning |
|---|---|
SOURCE-BACKED WORKFLOW | A substantial implementation was available in the repository sources. |
API / TUTORIAL REMINDER | A concise workflow summary links to package documentation. |
Static checks | CI checks document structure, paths, front matter, and code syntax; it does not run the analysis. |
draft | The guide has not been run on representative data. |
A source-backed workflow can still need adaptation and validation.
File conventions
Seurat objects use .qs2, AnnData objects use .h5ad, tables use TSV, and MOFA2 models use native HDF5.
License
See the MIT License.