Paired RNA and ATAC in R
Carry one paired Seurat object through cell matching, QC, WNN, peak-to-gene linkage, and optional RNA-reference label transfer.
- Input
- Paired RNA and ATAC counts, cell metadata, indexed fragments, and gene annotation.
- Analysis unit
- Matched cell.
- Outputs
- Paired Seurat object, WNN embedding and clusters, peak-gene links, and optional label transfer.
- Key limit
- Cell barcodes and genome coordinates must align across modalities and references.